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Ghildiyal M., Seitz H., Horwich M.D., Li C., Du T., Lee S., Xu J., Kittler E.L., Zapp M.L., Weng Z., Zamore P.D. (2008)
Endogenous siRNAs Derived from Transposons and mRNAs in Drosophila Somatic Cells.
Science, In press
Abstract
PDF |
| |
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Weng Z., Guigo R. (2008)
In silico meets in vivo.
Genome Biol. 2008 Feb 25;9(2):302
Abstract
PDF |
| |
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Hwang H., Pierce B., Mintseris J., Janin J., Weng Z. (2008)
Protein-protein docking benchmark version 3.0.
Proteins, In Press
|
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Zhang X., Guo C., Chen Y., Shulha H. P., Schnetz M. P., LaFramboise T., Bartels C. F., Markowitz S., Weng Z., Scacheri P. C., Wang Z. (2008)
Epitope tagging of endogenous proteins for genome-wide ChIP-chip studies.
Nat Methods. 5(2):163-5.
Abstract
PDF |
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Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS,
Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, Kapranov P, Nix DA, Gingeras TR, Zhang X, Holster
H, Jiang N11, Green R, Song JS, McCuine SA, Anton E, Nguyen L, Trinklein ND, Ye Z, Ching K, Hawkins D, Ren B,
Scacheri PC, Rozowsky J, Karpikov A, Euskirchen G, Weissman S, Gerstein M, Snyder M, Yang A, Moqtaderi Z, Hirsch H,
Shulha HP, Fu Y, Weng Z, Struhl K, Myers RM, Lieb JS, and Liu XS (2008)
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
Genome Research, 18, 393-403.
Abstract
PDF |
| |
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Pierce B, Weng Z (2008)
A combination of rescoring and refinement significantly improves protein docking performance.
Proteins, 72(1):270-279
Abstract
PDF |
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Wiehe K, Peterson MW, Pierce B, Mintseris J, Weng Z (2007)
Protein-protein docking: overview and performance analysis
Methods Mol Biol 413, 283-314.
Abstract
PDF |
| |
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Wiehe K, Pierce B, Tong W, Hwang H, Mintseris J, Weng Z (2007)
The Performance of ZDOCK and ZRANK in Rounds 6-11 of CAPRI
Proteins 69(4), 719-725.
Abstract
PDF |
| |
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Peckham HE, Thurman RE, Fu Y, Stamatoyannopoulos JA, Noble WS, Struhl K, Weng Z(2007)
Nucleosome Positioning Signals in Genomic
DNA.
Genome
Research, 17, 1170-1177.
Abstract
PDF |
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Mintseris J, Pierce B, Wiehe K, Anderson
R, Chen R, and Weng Z (2007)
Integrating Statistical Pair Potentials
into Protein Complex Prediction.
Proteins, 69(3), 511-520.
Abstract PDF |
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Xi
H., Shulha
H.P., Lin J.M., Vales T.R., Fu
Y., Bodine
D.M., McKay R.D.J,
Chenoweth J.G., Tesar
P.J., Furey T.S., Ren B., Weng
Z.+, Crawford
G.E.+ (2007)
Identification
and characterization of cell type-specific and ubiquitous chromatin
regulatory structures in the human genome.
+Co-corresponding
authors
PLoS
Genetics, 8, 8-20.
Abstract PDF |
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The
ENCODE Consortium (2007)
Identification
and
analysis of
functional elements in 1% of the human genome by the ENCODE pilot
project.
Nature
447, 799-816.
Weng Z. was as a co-chair for the ENCODE
Transcriptional Regulation analysis group and a co-corresponding author
of this Nature article.
Abstract
PDF |
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Trinklein
ND*, Karaoz
U*, Wu J*, Halees A*, Aldred SF, Collin PJ, Zheng D, Zhang ZD, Gerstein
M, Snyder M, Myers RM+, Weng Z+
(2007)
Integrated
analysis of
experimental datasets
reveals many novel promoters in 1% of the human genome.
*Authors
contributed equally
+Co-corresponding authors
Genome
Research 17, 720-731.
Abstract
PDF |
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Christoph
M. Koch, Robert M. Andrews, Paul Flicek, Shane C. Dillon,
Ulas Karaoz, Gayle K. Clelland, Sarah Wilcox, David M. Beare, Joanna C.
Fowler, Phillippe Couttet, Keith D. James, Gregory C. Lefebvre,
Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Pawandeep Dhami,
Cordelia F. Langford, Zhiping Weng, Ewan Birney, Nigel P. Carter, David
Vetrie, and Ian Dunham (2007)
The
landscape of
histone modifications across 1% of the human genome in five human cell
lines.
Genome Research 17, 691-707.
Abstract
PDF |
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Zhang
ZD, Paccanaro A, Fu Y, Weissman
S, Weng Z, Chang J, Snyder M, Gerstein MB (2007)
Statistical analysis of
the genomic distribution and correlation of regulatory elements in the
ENCODE regions.
Genome Research 17,
787-97.
Abstract
PDF |
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Heintzman
ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van
Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B
(2007)
Distinct
and predictive chromatin
signatures of transcriptional promoters and enhancers in the human
genome.
Nature
Genetics, 39(3):311-8.
Abstract
PDF |
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Xi
H,
Yu Y, Foley J, Halees A, Weng Z (2007)
Analysis
of Overrepresented Motifs in Human Core
Promoters Reveals Dual Regulatory Roles of YY1.
Genome Research 17, 798-806.
Abstract
PDF |
| |
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Lin J,
Collins PJ, Trinklein ND, Fu Y, Xi H,
Myers RM, Weng Z (2007)
Transcription Factor
Binding and Modified Histones
in Human Bidirectional Promoters.
Genome Research 17, 818-827.
Abstract
PDF |
| |
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Pierce
B, Weng Z (2007)
ZRANK: Reranking Protein Docking
Predictions with
an Optimized Energy Function.
Proteins 67(4): 1078-1086.
Abstract
PDF |
| |
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Pierce
B, Phillips AT, Weng Z (2007)
Structure Prediction
of Protein Complexes.
In Xu Y, Xu D & Liang J. (Eds.), Computational Methods for
Protein Structure Prediction and Modeling Volume 2: Structure
Prediction. (pp. 109-134). New York: Springer.
PDF |
| |
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Zeller KI, Zhao XD, Lee CWH, Chiu KP, Yao F, Yustein JT, Ooi HS, Orlov YL, Shahab A, Yong HC, Fu Y, Weng Z, Kuznetsov VA, Sung WK, Ruan Y, Dang CV, Wei CL (2006)
Global
mapping of c-Myc binding sites and target gene networks in human B
cells.
PNAS 103(47): 17834–17839.
Abstract
PDF |
|
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Wei
CL, Wu Q, Vega VB, Chiu KP, Ng P, Zhang T,
Shahab A, Yong HC, Fu Y, Weng Z, Liu J, Zhao XD, Chew JL, Lee YL,
Kuznetsov VA, Sung WK, Miller LD, Lim B, Liu ET, Yu Q, Ng HH, Ruan Y
(2006)
A Global Map of p53 Transcription Factor
Binding
Sites in the Human Genome.
Cell 124(1): 207-219.
Abstract
PDF |
| |
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Fu Y,
Weng Z (2005)
Improvement of TRANSFAC matrices
using multiple
local alignment of
transcription factor binding site sequences.
Genome Inform Ser Workshop Genome Inform. 16(1):68-72.
Abstract
PDF |
| |
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Burden
HE, Weng Z (2005)
Identification of conserved
structural features at
sequentially degenerate
locations in transcription factor binding sites.
Genome Inform Ser Workshop Genome Inform. 16(1):49-58.
Abstract
PDF |
| |
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Yu L*,
Haverty PM*, Mariani J, Wang Y, Shen HY,
Schwarzschild
MA, Weng Z, Chen JF (2005)
Genetic and
Pharmacological Inactivation of
Adenosine A2A Receptor
Reveals an Egr-2 Mediated Transcriptional Regulatory Network in the
Mouse Striatum.
Physiological Genomics 23(1), 89-102. *Authors contributed equally.
Abstract
PDF |
| |
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Leyfer
D, Weng Z (2005)
Genome-wide decoding of
hierarchical modular
structure of transcriptional regulation by cis-element and expression
clustering.
Bioinformatics 21(Supplement 2), ii197-ii203.
Abstract
PDF |
| |
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Peters
B, Bui HH, Sidney J, Weng Z, Loffredo JT,
Watkins DI, Mothe BR, Sette A (2005)
A
computational resource for the prediction of
peptide binding to Indian rhesus macaque MHC class I molecules.
Vaccine 23(45), 5212-5224.
Abstract
PDF |
| |
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Szustakowski
JD, Kasif S, Weng Z (2005)
Less is
more: towards an optimal universal
description of protein folds
Bioinformatics 21(Supplement 2), ii66-ii71.
Abstract
PDF |
| |
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Anderson
RJ, Weng Z, Campbell RK, Jiang X (2005)
Main-chain
conformational tendencies of amino acids
Proteins 60(4), 679-689.
Abstract
PDF |
| |
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Mintseris
J, Weng Z (2005)
Structure, function, and
evolution of transient
and obligate protein-protein interactions
PNAS 102(31), 10930-10935.
Abstract
PDF
Dataset |
| |
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Mintseris
J, Wiehe K, Pierce B, Anderson R, Chen
R, Janin J, Weng Z (2005)
Protein-Protein Docking
Benchmark 2.0: an update
Proteins 60(2), 214-216.
Abstract
PDF |
| |
|
Wiehe
K, Pierce B, Mintseris J, Tong W, Anderson
R, Chen R, Weng Z (2005)
ZDOCK and RDOCK
performance in CAPRI rounds 3, 4,
and 5
Proteins 60(2), 207-213.
Abstract
PDF |
| |
|
Pierce
B, Tong W, Weng Z (2005)
M-ZDOCK: A Grid-based
Approach for Cn
Symmetric Multimer Docking
Bioinformatics 21(8), 1472-1476.
Abstract
PDF |
| |
|
Haverty
PM, Weng Z, Hansen U (2005)
Transcriptional
Regulatory Networks Activated by
PI3K and ERK Transduced Growth Signals in Human Glioblastoma Cells
J. Comput. Sci. & Tech. 20(4), 439-445.
PDF |
| |
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Yanai
I*, Yu Y*, Zhu X, Cantor C, Weng Z (2005)
*Joint First Authors
An Avidin-like Domain that
Does Not Bind Biotin Is
Adopted for Oligomerization by the Extracellular Mosaic Protein
Fibropellin
Protein Science, Vol 14, 417-423.
Abstract
PDF |
| |
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Zhu J,
Weng Z (2005)
FAST: A Novel Protein Structure
Alignment Algorithm
Proteins: Structure Function, and Bioinformatics, Vol 58, 618-627.
Abstract
PDF |
| |
|
Tompa
M, Li N, Bailey TL, Church GM, De Moor B,
Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA,
Noble WS, Pavesi G, Pesole G, Regnier M, Simonis N, Sinha S, Thijs G,
van Helden J, Vandenbogaert M, Weng Z, Workman C, Ye C, Zhu Z. (2005)
Assessing computational tools for the
discovery of
transcription factor binding sites.
Nature Biotechnology, Vol 23, 137-144.
Abstract
PDF |
| |
|
The
ENCODE Project Consortium (2004)
The ENCODE
(ENCyclopedia Of DNA Elements) Project
Science, Vol 306, 636-640.
Abstract
PDF |
| |
|
Haverty
PM, Hsiao L, Gullans SR, Hansen U, Weng Z
(2004)
Limited Agreement among Three Global Gene
Expression Methods Highlights the Requirement for Non-Global Validation
Bioinformatics. Vol 20, 3431-3441.
Abstract
PDF |
| |
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Hu Z,
Fu Y, Halees AS, Kielbasa SM, Weng Z (2004)
SeqVISTA:
a New Module of Integrated Computational
Tools for Studying Transcriptional Regulation
Nucleic Acids Res., Vol 32, Web Server Issue, W235-W241.
Abstract
PDF |
| |
|
Mintseris
J, Weng Z (2004)
Optimizing Protein Representations
with
Information Theory
Genome Informatics, 15(1):160-169
Abstract
PDF |
| |
|
Halees
AS, Weng Z (2004)
PromoSer: Improvements on
Algorithm, Visualization
and Accessibility
Nucleic Acids Res., Vol 32, Web Server Issue, W191-W194.
Abstract
PDF |
| |
|
Fu, Y.,
Frith, M.C., Haverty, P.M. &
Weng, Z. (2004)
MotifViz: an Analysis and
Visualization Tool for
Motif Discovery
Nucleic Acids Res., Vol. 32, Web Server Issue, W420-W423.
Abstract
PDF |
| |
|
Haverty,
P.M., Frith, M.C. & Weng, Z.
(2004)
CARRIE Web Service: Automated
Transcriptional
Regulatory Network Inference and Interactive Analysis
Nucleic Acids Res., Vol. 32, Web Server Issue, W213-W216.
Abstract
PDF |
| |
|
Leyfer,
D., Bond, A., Tworog, E., Perron, D.,
Maska, S., Brito, A., Kamens, J., Weng, Z. & Voss, J. (2004)
Cis-Element Clustering Correlates with
Dose-Dependent Pro- and Anti- Signaling Effects of IL18
Genes and Immunity, June 10, 1-9
Abstract PDF |
| |
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Haverty,
P.M. & Weng, Z. (2004)
CisML, an XML-based
Format for Sequence Motif
Detection Software
Bioinformatics, 20(11), 1815-1817.
Abstract
PDF |
| |
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Frith,
M. C., Fu, Y., Yu, L., Chen, J. F.,
Hansen, U. & Weng, Z. (2004)
Detection of
Functional DNA Motifs via Statistical
Overrepresentation
Nucleic Acids Res. 2004 Feb 26; 32(4):1372-1381.
Abstract PDF |
| |
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Frith,
M. C.*, Halees, A. S.*, Hansen, U.
& Weng, Z. (2004)
*Joint First Authors
Site2genome: Locating Short
DNA Sequences in Whole
Genomes
Bioinformatics. 20(9):1468-1469
Abstract PDF |
| |
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Haverty,
P. M., Hansen, U. & Weng, Z.
(2004)
Computational Inference of Transcriptional
Regulatory Networks from Expression Profiling and Transcription Factor
Binding Site Identification
Nucleic Acids Res. 2004 Jan 1;32(1):179-188.
Abstract PDF |
| |
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Frith,
M. C., Hansen, U., Spouge, J. L. &
Weng, Z. (2004)
Finding Functional Sequence
Elements by Multiple
Local Alignment
Nucleic Acids Res. 2004 Jan 1;32(1):189-200.
Abstract PDF |
| |
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Peters,
B., Tong, W., Sidney, J., Sette, A.
& Weng, Z. (2003)
Examining the Independent
Binding Assumption for
Binding of
Peptide Epitopes to MHC-I Molecules
Bioinformatics. 19:1765-1772.
Abstract PDF |
| |
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Halees,
A.S., Leyfer, D. & Weng, Z.
(2003)
PromoSer: A Larger-scale Mammalian
Promoter and
Transcription Start Site
Identification Service.
Nucleic Acids Res. 2003 Jul 1;31(13):3554-9.
Abstract PDF |
| |
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Frith,
M.C., Li, M.C. & Weng, Z. (2003)
Cluster-Buster:
Finding Dense Clusters of Motifs
in DNA Sequences.
Nucleic Acids Res. 2003 Jul 1;31(13):3666-8.
Abstract PDF |
| |
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Li,
L.*, Chen, R.* & Weng, Z. (2003)
*Joint First Authors
RDOCK: Refinement of
Rigid-body Protein Docking
Predictions.
Proteins. 53:693-707.
Abstract PDF |
| |
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Mintseris,
J. & Weng, Z. (2003)
Atomic Contact Vectors
in Protein-Protein
Recognition.
Proteins. 53:629-639.
Abstract PDF |
| |
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Chen,
R., Tong, W., Mintseris, J., Li, L.
& Weng, Z. (2003)
ZDOCK Predictions for the
CAPRI Challenge.
Proteins. 2003 Jul 1;52(1):68-73.
Abstract PDF |
| |
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Chen,
R., Li, L. & Weng, Z. (2003)
ZDOCK: An
Initial-stage Protein Docking Algorithm.
Proteins. 2003 Jul 1;52(1):80-7.
Abstract PDF |
| |
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Chen,
R., Mintseris, J., Janin, J. &
Weng, Z. (2003)
A Protein-Protein Docking
Benchmark.
Proteins. 2003 Jul 1;52(1):88-91
Abstract PDF |
| |
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Chen,
R. & Weng, Z. (2003)
A Novel Shape
Complementarity Scoring Function For
Protein-Protein
Docking.
Proteins. 2003 May 15;51(3):397-408.
Abstract PDF |
| |
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Hu, Z.,
Frith, M., Niu, T. & Weng, Z.
(2003)
SeqVISTA: A Graphical Tool for Sequence
Feature
Visualization and
Comparison
BMC Bioinformatics 4: 1
Abstract PDF |
| |
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Kasif,
S., Weng, Z. Derti, A., Beigel, R.
& DeLisi, C. (2002)
A Computational
Framework for Optimal Masking in
the Synthesis of
Oligonucleotide Microarrays.
Nucleic Acid Research 30(20): e106
Abstract PDF |
| |
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Wong,
J. Y., Weng, Z., Moll, S., Kim, S.
& Brown, C. (2002)
Identification and
validation of a novel
cell-recognition site (KNEED)
on the 8th type III domain of fibronectin.
Biomaterials 23: 3865-3870
Abstract PDF |
| |
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Brown,
C.T., Weng, Z., Zhang, H. & Wong,
J.Y. (2002)
Mutational Analysis Verifies that
"KNEED" Sequence
of Fibronectin
Participates in Cell-substrate Interactions.
Polym. Prep. 43(2): 754. |
| |
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Frith,
M.C., Hansen, U. & Weng, Z. (2002)
A Gibbs
Sampling Algorithm to Detect Clustered
Cis-elements.
Proceedings of the Third International Conference on Bioinformatics of
Genome Regulation and Structure (1) 59-61 |
| |
|
Anderson,
R. & Weng, Z.
Bioinformatics.
Encyclopedia of Sciences 2002
PDF |
| |
|
J.D.
Szustakowski and Z. Weng. (2002)
K2: Protein
structure comparison and their
statistical significance.
Evolutionary Computation in Bioinformatics.
Edited by G. Fogel and D. Corne, Morgan Kaufman.
Abstract PDF |
| |
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Weng,
Z. (2001)
Bioinformatics.
Macmillan's Biology
PDF |
| |
|
Betley
JN, Frith MC, Graber JH, Choo S, Deshler
JO. (2002)
A ubiquitous and conserved signal for
RNA
localization in chordates.
Curr Biol. 12(20):1756-61.
Abstract |
| |
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Yu
Zheng, Joseph D. Szustakowski, Lance Fortnow,
Rich Roberts, Simon
Kasif. (2002)
Computational identification of
operons in
microbial genomes.
Genome Research 12(8):1221-30
Abstract |
| |
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Martin
C. Frith, John L. Spouge, Ulla Hansen,
Zhiping Weng. (2002)
Statistical significance of
clusters of motifs
represented by position specific scoring matrices in nucleotide
sequences.
Nucleic Acids Research 30(14):3214-24
Abstract PDF |
| |
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Chen,
R. & Weng, Z. (2002)
Docking Unbound
Proteins Using Shape
Complementarity, Desolvation, and Electrostatics.
Proteins.
Structure, Function, and Genetics.
47:281-294
Abstract PDF |
| |
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Weng,
Z. & DeLisi, C. (2002)
Protein
Therapeutics: promises and challenges for
the 21st century.
Trends in Biotechnology 20:29-35
Abstract PDF |
| |
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Barbara
L. Resendes, Nahid G. Robertson, Joseph
D. Szustakowski, Robert
J. Resendes, Zhiping Weng, and Cynthia C. Morton (2002)
Gene
Discovery in the Auditory System:
Characterization of Additional Cochlear-Expressed Sequences
Journal of the Association for Research in Otolaryngology 3(1):45-53
Abstract PDF |
| |
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Haverty,
PM., Weng, Z., Hsiao, L., Best, N.,
Auerbach, K., Jensen,
RV., Gullans, SR. (2002)
HugeIndex: A Database of
High Density
Oligonucleotide Array Data from Normal Human Tissues
Nucleic Acids Research. 30(1): 214-217.
Abstract PDF |
| |
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Frith,
MC., Hansen, U., Weng, Z. (2001)
Detection of
cis-element clusters in higher
eukaryotic DNA
Bioinformatics 17(10):878-889
Abstract PDF |
| |
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Hsiao,
L.L., Dangond, F., Yoshida, T., Hong, R.,
Jensen, R.V., Misra, J., Dillon, W.,
Lee, K.F., Clark, K.E., Haverty, P., Weng, Z., Mutter, G.L., Frosch,
M.P.,
Macdonald, M.E., Milford, E.L., Crum, C.P., Bueno, R., Pratt, R.E.,
Mahadevappa, M., Warrington, J.A., Stephanopoulos, G., Stephanopoulos,
G.,
Gullans, S.R. (2001)
A Compendium of Gene
Expression in Normal Human
Tissues.
Physiological Genomics. 7: 97-104.
Abstract PDF |
| |
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Lander
ES, ... , Szustakowski J, ... ,et al.
(2001)
Initial sequencing and analysis of the human
genome.
Nature 409(6822):860-921
Abstract |
| |
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Weng
Z, DeLisi C
Amino acid
substitutions: effects on protein
stability.
Encyclopedia of Sciences
PDF |
| |
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Szustakowski
JD, Weng Z (2000)
Protein structure alignment using
a genetic
algorithm.
Proteins. 38(4):428-40
Abstract PDF |
| |
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Chen,
R.,, Xu, Y.Z., Wu, J.,Pu, Z., Jin, S.W.,
Liu, W.Y. & Xia, Z.X. (1999)
Purification
and Characterization of
Trichomaglin-A Novel
Ribosomal-inactivating Protein with Abortificient Activity.
Biochem. Mol. Biol. Int. 47:185-93
Abstract |
| |
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Esposito
M, Venkatesh V, Otvos L, Weng Z, Vajda
S, Banki K, Perl A (1999)
Human transaldolase and
cross-reactive viral
epitopes identified by autoantibodies of multiple sclerosis patients.
J. Immunol. 163(7):4027-4032
Abstract PDF |
| |
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Anderson
A, Weng Z (1999)
VRDD: Applying virtual reality
visualization to
protein docking and design.
J. Molecular Graphics & Modeling. 17(3-4):180-186, 217
Abstract PDF |
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Khanna
R, Silins SL, Weng Z, Gatchell D, Burrows
S, Cooper L (1999) Cytotoxic T cell recognition of
allelic variants
of HLA B35 bound to an Epstein-Barr virus epitope: influence of peptide
conformation and TCR-peptide interaction.
Eur. J. Immunol. 29(5): 1587-1597
Abstract PDF |
| |
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Skvorak
AB, Weng Z, Yee AJ, Robertson NG, Morton
CC (1999)
Human cochlear expressed sequence tags
provide
insight into cochlear gene expression and identify candidate genes for
deafness.
Hum. Molec. Genet. 8(3): 439-452
Abstract PDF |
| |
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Camacho
C, Weng Z, Vajda S, DeLisi C (1999)
Free Energy
Landscapes of Encounter Complexes in
Protein-Protein Association.
BioPhys. J. 76(3): 1166-78
Abstract PDF |
| |
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Wang,
X.Q., Chen, R., Wang, Y.L., He, T.J.
& Liu, F.C. (1998)
Theoretical Studies on
Electrocompression of
Electrodeposited Halid Monolayer on
Au(111) Surface.
J. Phys. Chem. B102:7568-76
PDF |
| |
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Weng Z,
Gulukota K, Vaughn D, Bjorkman P, DeLisi
C (1998)
Computational determination of the
structure of
Rat Fc bound to the neonatal Fc receptor.
J. Mol. Biol. 282(2): 217-225
Abstract PDF |
| |
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Weng Z,
DeLisi C (1998)
Toward a predictive understanding
of molecular
recognition.
Immuno. Rev. 163: 251-266
Abstract PDF |
| |
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Zhang
C, Kimura SR, Weng Z, Vajda S, Brower RC,
DeLisi C (1998)
The waters of life.
J. Franklin Inst. 335B: 213-240.
PDF |
| |
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DeLisi
C, Cantor C, Weng Z (1997)
Hedgehogs, foxes, and a
new science.
Nature Biotechnology 15(9): 819
Abstract PDF |
| |
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Weng Z,
DeLisi C, Vajda S. (1997)
Empirical free energy
calculation: comparison to
calorimetric data.
Protein Science 6(9): 1976-84.
Abstract PDF |
| |
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Weng Z,
Vajda S, DeLisi C. (1996)
Prediction of protein
complexes using empirical
free energy functions.
Protein Science 5(4): 614-26.
Abstract PDF |
| |
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Vajda
S, Weng Z, DeLisi C (1995)
Extracting
hydrophobicity parameters from solute
partition and
protein mutation/unfolding experiments.
Protein Eng 8(11): 1081-92.
Abstract PDF |
| |
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Vajda
S, Weng Z, Rosenfeld R, DeLisi C. (1994)
Effect of
conformational flexibility and solvation
on receptor-ligand binding free energies.
Biochemistry 33(47): 13977-88.
Abstract PDF |
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