CLUSTER-BUSTER
Compiled on Apr 21 2004

>X12345|Your favorite gene (1101 bp)

CLUSTER 1
Location: 526 to 549
Score: 6.53
GGAGGGAGGGAGCGAGGGAGCAAC
M00196	SRF                     526 -  538   +   5.02       ggagggagggagc
M00807	CREB                    527 -  537   +   4.39       gagggagggag
M00807	CREB                    531 -  541   +   5.31       gagggagcgag
M00807	CREB                    539 -  549   +   5.55       gagggagcaac

>X54321|Your other favorite gene (1101 bp)

CLUSTER 1
Location: 528 to 588
Score: 7.6
GCGGGGGGAAGgtagagAAGGGGAGGGGACAAGccggatcctcccggccgccccggccttc
M00807	CREB                    528 -  538   +   5.6        gcggggggaag
M00196	SRF                     545 -  557   +   6.88       aaggggaggggac
M00807	CREB                    550 -  560   +   4.92       gaggggacaag

CLUSTER 2
Location: 140 to 152
Score: 5.54
AGGGGGCGGGAGA
M00196	SRF                     140 -  152   +   7.61       agggggcgggaga
M00807	CREB                    141 -  151   +   4.37       gggggcgggag

Sequence file: Your_seqs.fa (2 sequences)
Matrix file: Your_mats.fa (2 matrices)
Expected gap: 1
Range for local abundances: 100
Lowercase filtering OFF
Pseudocount: 0.375
Cluster score threshold: 5
Motif score threshold: 4