MatInspector Release 1.0   September 1995           Thu Nov 16 11:48:07 1995


   Solution parameters:
   ~~~~~~~~~~~~~~~~~~~~
   sequence file:     chr3.seq
   selected matrices: 
            F$ABF1_01            (ABF1                          )  re:   0.13
            	core sim:   0.80     matrix sim: 0.85

   Explanation for column output:
   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	->	Matrix positions correspond to sense strand numbering, but all
		sequences are given in 5'-3' direction.

	->	n/a in column 'core simil.' indicates, that no core search
		was conducted.

	->	n/a in column 'matrix simil.' indicates, that no 
		matrix similarity was calculated, because the sequences was
		too short (only the core was found). In that case the
		core position is given in brackets in column 'matrix position'.

	->	Capital letters within the sequence indicate the core string.

 matrix               | matrix       | core   | matrix | sequence
 name                 | position(str)| simil. | simil. | 
-----------------------------------------------------------------------
 Sequence: SCCHRIII
 F$ABF1_01            |      820 (+) |  0.951 |  0.930 | tcgcatcattatgcACGGcttg
 F$ABF1_01            |     8203 (+) |  0.976 |  0.876 | cgatgtcatagagtACGTgtca
 F$ABF1_01            |    14114 (-) |  1.000 |  0.914 | acacatccttaaatACGAaagt
 F$ABF1_01            |    14584 (-) |  0.976 |  0.931 | ggatatcattgcaaACGTcggg
 F$ABF1_01            |    17119 (-) |  0.951 |  0.877 | actaatcaccgcgaACGGaaac
 F$ABF1_01            |    24619 (+) |  1.000 |  0.857 | tagtatcgcgctgcACGAgcgt
 F$ABF1_01            |    27217 (+) |  0.878 |  0.853 | acttatcgttgaccACGCctag
 F$ABF1_01            |    28609 (-) |  0.976 |  0.885 | tcaagtcagtgtctACGTtaca
 F$ABF1_01            |    33125 (-) |  0.976 |  0.879 | gcaaatcaggttcaACGTtatt
 F$ABF1_01            |    47021 (+) |  1.000 |  0.919 | aaaaatcacggtgtACGAagaa
 F$ABF1_01            |    48488 (-) |  1.000 |  0.877 | attcgtcacactgcACGAacgc
 F$ABF1_01            |    51172 (+) |  1.000 |  0.857 | gaacgtcacatctgACGAcctg
 F$ABF1_01            |    51371 (-) |  0.951 |  0.854 | cgacatcctttccgACGGtgtc
 F$ABF1_01            |    52479 (+) |  0.951 |  0.907 | caatatcatcggaaACGGgcct
 F$ABF1_01            |    53367 (+) |  1.000 |  0.850 | atatatcgatccgaACGAactc
 F$ABF1_01            |    54258 (+) |  1.000 |  0.855 | gaaaatcagctatgACGAtaaa
 F$ABF1_01            |    61485 (-) |  0.976 |  0.929 | cttgatcactttacACGTcaag
 F$ABF1_01            |    65680 (-) |  1.000 |  0.900 | tgtcatcacttcgaACGAcgta
 F$ABF1_01            |    69015 (-) |  1.000 |  0.863 | agagatcaaagaaaACGAagag
 F$ABF1_01            |    73225 (+) |  1.000 |  0.892 | tcacgtcagtgttgACGAtaaa
 F$ABF1_01            |    83589 (-) |  1.000 |  0.916 | tgtgatcaatgtacACGAaagt
 F$ABF1_01            |    84210 (+) |  0.976 |  0.872 | ttacatcaaaatccACGTtctt
 F$ABF1_01            |    84725 (+) |  0.976 |  0.867 | ttacatcaaaatccACGTtctc
 F$ABF1_01            |    85024 (-) |  0.951 |  0.924 | acacgtcatcatagACGGttgt
 F$ABF1_01            |    85812 (+) |  1.000 |  0.854 | gcacatctccaaacACGActaa
 F$ABF1_01            |    99264 (-) |  0.878 |  0.862 | tgttttcatttgatACGCcctt
 F$ABF1_01            |   103095 (+) |  1.000 |  0.913 | atacatcacttccgACGAtacc
 F$ABF1_01            |   105754 (+) |  0.951 |  0.861 | ataactcattgactACGGtttg
 F$ABF1_01            |   107281 (-) |  0.878 |  0.858 | tcatgtcttttaaaACGCttcc
 F$ABF1_01            |   108206 (+) |  1.000 |  0.865 | atgattcattcaacACGAccac
 F$ABF1_01            |   108280 (-) |  1.000 |  0.869 | aagtttcattggtgACGAatga
 F$ABF1_01            |   111614 (+) |  0.878 |  0.874 | taaagtcactcctcACGCtaag
 F$ABF1_01            |   118099 (+) |  1.000 |  0.865 | tctcatcgtatcatACGAttat
 F$ABF1_01            |   124722 (-) |  1.000 |  0.908 | attagtcattgaatACGAcaaa
 F$ABF1_01            |   127471 (+) |  0.976 |  0.879 | aaaaatcacctggcACGTcatt
 F$ABF1_01            |   134015 (+) |  0.976 |  0.931 | tgatatcattggagACGTtgta
 F$ABF1_01            |   135059 (+) |  1.000 |  0.867 | agtcatcttgatcgACGAaccc
 F$ABF1_01            |   135605 (+) |  0.951 |  0.859 | aagggtcaccaaacACGGtcaa
 F$ABF1_01            |   136083 (-) |  0.976 |  0.856 | agggatcaattgtgACGTttgt
 F$ABF1_01            |   136829 (-) |  0.951 |  0.887 | acaaatcacgagcgACGGtaat
 F$ABF1_01            |   140088 (+) |  0.976 |  0.870 | tcctttcactttctACGTcagt
 F$ABF1_01            |   143824 (+) |  1.000 |  0.857 | ttttttcaatttggACGAaatc
 F$ABF1_01            |   145543 (-) |  0.878 |  0.852 | ttgggtcgttgcatACGCattt
 F$ABF1_01            |   149345 (-) |  0.976 |  0.906 | ctttttcattttatACGTttca
 F$ABF1_01            |   161525 (-) |  0.976 |  0.857 | aaatatcaaaccttACGTtatt
 F$ABF1_01            |   164032 (+) |  1.000 |  0.897 | ttttatcgttaatgACGAagat
 F$ABF1_01            |   171962 (+) |  0.951 |  0.862 | gaggttcattgaaaACGGtgat
 F$ABF1_01            |   174197 (-) |  1.000 |  0.877 | tgatctcatgaataACGAattt
 F$ABF1_01            |   175353 (+) |  1.000 |  0.887 | aaagatcacgggctACGAaaag
 F$ABF1_01            |   175569 (-) |  0.976 |  0.894 | ggctatcatgtttcACGTtacg
 F$ABF1_01            |   176122 (-) |  0.976 |  0.876 | tcaaatcagctcatACGTtaat
 F$ABF1_01            |   184863 (+) |  0.878 |  0.913 | caatatcattaccaACGCcggg
 F$ABF1_01            |   191868 (-) |  1.000 |  0.917 | tcaaatcacagtcgACGAaagt
 F$ABF1_01            |   208483 (+) |  0.976 |  0.867 | tcaattctctatacACGTacgt
 F$ABF1_01            |   212059 (-) |  0.976 |  0.924 | ccatatcatgtaaaACGTgagc
 F$ABF1_01            |   215219 (-) |  1.000 |  0.870 | cacggtcactactcACGAggag
 F$ABF1_01            |   215729 (-) |  0.976 |  0.856 | ccttgtcaccagtgACGTtttg
 F$ABF1_01            |   222131 (-) |  0.951 |  0.856 | cttgatcacatgcgACGGgagt
 F$ABF1_01            |   224009 (+) |  1.000 |  0.890 | aaaaatcagttacgACGAagca
 F$ABF1_01            |   226918 (+) |  0.951 |  0.854 | atttgtcgttcacaACGGaaag
 F$ABF1_01            |   227591 (-) |  1.000 |  0.855 | agtggtcgtctttgACGAagga
 F$ABF1_01            |   232427 (-) |  1.000 |  0.876 | tacaatcacctaagACGAgtgt
 F$ABF1_01            |   232885 (+) |  0.878 |  0.861 | tgggatcaaattagACGCaact
 F$ABF1_01            |   241511 (-) |  0.976 |  0.866 | ggccatcatgtaccACGTtgct
 F$ABF1_01            |   245089 (+) |  0.976 |  0.876 | gcgattcattgaaaACGTatcg
 F$ABF1_01            |   257473 (-) |  0.951 |  0.907 | acatgtcatttggtACGGtatc
 F$ABF1_01            |   261502 (-) |  0.951 |  0.875 | cattatcgctaccgACGGacct
 F$ABF1_01            |   261859 (-) |  0.878 |  0.859 | cttcttcactcttgACGCcagt
 F$ABF1_01            |   270172 (-) |  1.000 |  0.885 | agacatcaaaatagACGAcgag
 F$ABF1_01            |   270747 (+) |  1.000 |  0.863 | ttccatcagtaacgACGAtaat
 F$ABF1_01            |   272628 (-) |  1.000 |  0.871 | ttgtttcattgatgACGAagga
 F$ABF1_01            |   275782 (+) |  0.951 |  0.853 | ataattccttattaACGGagat
 F$ABF1_01            |   277614 (+) |  1.000 |  0.887 | caaattcatcatacACGActtc
 F$ABF1_01            |   277915 (-) |  0.976 |  0.862 | ggatgtcagattaaACGTtcac
 F$ABF1_01            |   278673 (-) |  0.951 |  0.911 | atttatcactcctgACGGaata
 F$ABF1_01            |   281396 (+) |  0.976 |  0.874 | tcagttcatggtcaACGTtact
 F$ABF1_01            |   282626 (+) |  1.000 |  0.855 | acaattcagggtatACGAagaa
 F$ABF1_01            |   286846 (-) |  0.976 |  0.893 | tgatttcatgataaACGTtttc
 F$ABF1_01            |   291477 (+) |  1.000 |  0.928 | atacatcataaaatACGAacga
 F$ABF1_01            |   293044 (-) |  1.000 |  0.937 | tttaatcattgaaaACGAattt
 F$ABF1_01            |   293524 (-) |  1.000 |  0.908 | ttatatcgccatatACGAaaat
 F$ABF1_01            |   301286 (+) |  0.976 |  0.861 | ttgggtcatataaaACGTctgc
 F$ABF1_01            |   304162 (-) |  0.951 |  0.901 | tgtcgtcattgaagACGGtaaa
 F$ABF1_01            |   309562 (+) |  1.000 |  0.925 | acaagtcattgagaACGAaatt
 F$ABF1_01            |   314756 (-) |  0.951 |  0.959 | ccacatcattatgcACGGcact

 In   1 sequences  85 matches to the matrix F$ABF1_01 were found.