<?xml version="1.0"?>
<cis-element-search
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://zlab.bu.edu/schema/cisml cisml.xsd"
xmlns="http://zlab.bu.edu/schema/cisml"
>
	<program-name>POSSUM</program-name>
	<parameters>
		<sequence-file>pdgf.fa</sequence-file>
		<pattern-file>EGR.Sp1.mats.fa</pattern-file>
		<score-cutoff>5</score-cutoff>
		<bg-range>100</bg-range>
		<sequence-filtering on-off="off"/>
		<score-cutoff>0.375</score-cutoff>
	</parameters>
	<pattern accession="M00196" name="stimulating protein 1" >
		<scanned-sequence accession="NM_006206" name="0|hs_chr4|+|54154362|54159862" length="5500">
			<matched-element start="1015" stop="1003" score="6.16"><sequence>acctcctcctcct</sequence></matched-element>
			<matched-element start="1182" stop="1170" score="5.68"><sequence>gcctcggcctccc</sequence></matched-element>
			<matched-element start="3008" stop="3020" score="10.7"><sequence>aaggggtgggact</sequence></matched-element>
			<matched-element start="3652" stop="3664" score="8.22"><sequence>gccgggcgtggtg</sequence></matched-element>
			<matched-element start="3858" stop="3870" score="5.50"><sequence>aggaggtggaggt</sequence></matched-element>
			<matched-element start="3933" stop="3921" score="6.77"><sequence>gactccgcctcaa</sequence></matched-element>
			<matched-element start="4817" stop="4829" score="5.44"><sequence>tgggggcggggaa</sequence></matched-element>
			<matched-element start="4890" stop="4902" score="7.79"><sequence>gaggggcggggcc</sequence></matched-element>
		</scanned-sequence>
	</pattern>
	<pattern accession="M00807" name="EGR" >
		<scanned-sequence accession="NM_006206" name="0|hs_chr4|+|54154362|54159862" length="5500">
			<matched-element start="1709" stop="1699" score="5.96"><sequence>gtctcccctgg</sequence></matched-element>
			<matched-element start="1877" stop="1867" score="7.62"><sequence>gctacctccac</sequence></matched-element>
			<matched-element start="2309" stop="2299" score="5.02"><sequence>tcaccccccaa</sequence></matched-element>
			<matched-element start="2772" stop="2762" score="6.74"><sequence>tatacccccag</sequence></matched-element>
			<matched-element start="2899" stop="2909" score="5.28"><sequence>ttgggcgtaaa</sequence></matched-element>
			<matched-element start="3007" stop="3017" score="6.28"><sequence>taaggggtggg</sequence></matched-element>
			<matched-element start="3863" stop="3873" score="5.90"><sequence>gtggaggttgc</sequence></matched-element>
			<matched-element start="4485" stop="4475" score="5.12"><sequence>gctacctccgg</sequence></matched-element>
			<matched-element start="4816" stop="4826" score="8.18"><sequence>gtgggggcggg</sequence></matched-element>
			<matched-element start="5466" stop="5456" score="5.81"><sequence>cccacgcccac</sequence></matched-element>
		</scanned-sequence>
	</pattern>
</cis-element-search>
