Sequence Analysis with Your Favorite Program

Multi-pattern Scan #1

Group P-Value: 12.37e-19

Sequence #1
regulator of G-protein signalling 2
Accession	W10325	P-Value	9.97e-09

Pattern #1 Hits
E2F-1
Pattern Accession		Pattern P-Value
M00431		9.37e-12
Start	Stop	P-Value	Cluster Id	Sequence
248	241	0.000187535	1	CGTGGCGC
728	735	0.000252362	1	TCTCGCGG
796	803	0.00023847	1	TTTCCCCC
916	923	0.000152806	1	TGTGGCGG

Pattern #2 Hits
E2F-3
Pattern Accession		Pattern P-Value
M00437		3.34e-5
Start	Stop	P-Value	Cluster Id	Sequence
116	123	0.000152806	1	TGTGGCGG
228	235	0.000252362	1	TCTCGCGG
396	403	0.00023847	1	TTTCCCCC
448	441	0.000187535	1	CGTGGCGC

Sequence #2
small inducible cytokine
Accession	W10326	P-Value	9.88e-09

Pattern #1 Hits
E2F-1
Pattern Accession		Pattern P-Value
M00431		9.37e-12
Start	Stop	P-Value	Cluster Id	Sequence
248	241	0.000187535	1	CGTGGCGC
728	735	0.000252362	1	TCTCGCGG
796	803	0.00023847	1	TTTCCCCC
916	923	0.000152806	1	TGTGGCGG

Pattern #2 Hits
E2F-3
Pattern Accession		Pattern P-Value
M00437		3.34e-5
Start	Stop	P-Value	Cluster Id	Sequence
1916	1923	0.000152806	1	TGTGGCGG
2728	2735	0.000252362	1	TCTCGCGG
3796	3803	0.00023847	1	TTTCCCCC
4248	4241	0.000187535	1	CGTGGCGC

Multi-pattern Scan #2

Group P-Value: 11.88e-09

Sequence #1
regulator of G-protein signalling
Accession	W10325	P-Value	9.88e-09

Pattern #1 Hits
E2F-1
Pattern Accession		Pattern P-Value
M00431		9.48e-12
Start	Stop	P-Value	Cluster Id	Sequence
278	285	0.000187535	1	CGTGGCGC
698	705	0.000252362	1	TCTCGCGG
856	863	0.00023847	1	TTTCCCCC
946	953	0.000152806	1	TGTGGCGG

Pattern #2 Hits
LSF
Pattern Accession		Pattern P-Value
M00440		9.98e-11
Start	Stop	P-Value	Cluster Id	Sequence
248	241	0.000187535	1	CGTGGCGC
728	735	0.000252362	1	TCTCGCGG
796	803	0.00023847	1	TTTCCCCC
916	923	0.000152806	1	TGTGGCGG

Sequence #2
small inducible cytokine
Accession	W10326	P-Value	9.88e-09

Pattern #1 Hits
E2F-1
Pattern Accession		Pattern P-Value
M00431		9.48e-12
Start	Stop	P-Value	Cluster Id	Sequence
166	173	0.000152806	1	TGTGGCGG
278	285	0.000252362	1	TCTCGCGG
446	453	0.00023847	1	TTTCCCCC
498	491	0.000187535	1	CGTGGCGC

Pattern #2 Hits
LSF
Pattern Accession		Pattern P-Value
M00440		9.98e-11
Start	Stop	P-Value	Cluster Id	Sequence
116	123	0.000152806	1	TGTGGCGG
228	235	0.000252362	1	TCTCGCGG
396	403	0.00023847	1	TTTCCCCC
448	441	0.000187535	1	CGTGGCGC

Multi-pattern Scan #3

Group P-Value: 5.87e-7

Sequence #1
regulator of G-protein signalling
Accession	W10325	P-Value	9.88e-09

Pattern #1 Hits
E2F-3
Pattern Accession		Pattern P-Value
M00439		1.25e-9
Start	Stop	P-Value	Cluster Id	Sequence
248	241	0.000187535	1	CGTGGCGC
728	735	0.000252362	1	TCTCGCGG
796	803	0.00023847	1	TTTCCCCC
916	923	0.000152806	1	TGTGGCGG

Pattern #2 Hits
E2F-2
Pattern Accession		Pattern P-Value
M00437		3.31e-5
Start	Stop	P-Value	Cluster Id	Sequence
116	123	0.000152806	1	TGTGGCGG
228	235	0.000252362	1	TCTCGCGG
396	403	0.00023847	1	TTTCCCCC
448	441	0.000187535	1	CGTGGCGC

Sequence #2
small inducible cytokine
Accession	W10326	P-Value	9.88e-09

Pattern #1 Hits
E2F-3
Pattern Accession		Pattern P-Value
M00439		1.25e-9
Start	Stop	P-Value	Cluster Id	Sequence
116	123	0.000152806	1	TGTGGCGG
228	235	0.000252362	1	TCTCGCGG
396	403	0.00023847	1	TTTCCCCC
448	441	0.000187535	1	CGTGGCGC

Pattern #2 Hits
E2F-2
Pattern Accession		Pattern P-Value
M00437		3.31e-5
Start	Stop	P-Value	Cluster Id	Sequence
248	241	0.000187535	1	CGTGGCGC
728	735	0.000252362	1	TCTCGCGG
796	803	0.00023847	1	TTTCCCCC
916	923	0.000152806	1	TGTGGCGG

Pattern File: patterns.txt

Sequences File: sequence.txt

Background Sequence File: bg.sequences.txt

Sequence Filtering: on

Sequence Pvalue Cutoff: 0.01

Site Pvalue Cutoff: 0.001