#Sequence Analysis by Your Favorite Program

#Pattern File: patterns.txt
#Sequences File: sequence.txt
#Background Sequences File: bg.sequences.txt
#Sequence Filtering: on
#Sequence Pvalue Cutoff: 0.01
#Site Pvalue Cutoff: 0.001


Multi-pattern Scan #1
Group P-Value: 12.37e-19


Sequence #1
Accession: W10325	Name:regulator of G-protein signalling 2

Pattern #1 Accession: M00431 P-Value: 9.37e-12 Name: E2F-1
Start	Stop	P-Value	Sequence	Cluster ID
248	241	0.000187535	CGTGGCGC	1	
728	735	0.000252362	TCTCGCGG	1	
796	803	0.00023847	TTTCCCCC	1	
916	923	0.000152806	TGTGGCGG	1	

Pattern #2 Accession: M00437 P-Value: 3.34e-5 Name: E2F-3
Start	Stop	P-Value	Sequence	Cluster ID
116	123	0.000152806	TGTGGCGG	1	
228	235	0.000252362	TCTCGCGG	1	
396	403	0.00023847	TTTCCCCC	1	
448	441	0.000187535	CGTGGCGC	1	


Sequence #2
Accession: W10326	Name:small inducible cytokine

Pattern #1 Accession: M00431 P-Value: 9.37e-12 Name: E2F-1
Start	Stop	P-Value	Sequence	Cluster ID
248	241	0.000187535	CGTGGCGC	1	
728	735	0.000252362	TCTCGCGG	1	
796	803	0.00023847	TTTCCCCC	1	
916	923	0.000152806	TGTGGCGG	1	

Pattern #2 Accession: M00437 P-Value: 3.34e-5 Name: E2F-3
Start	Stop	P-Value	Sequence	Cluster ID
1916	1923	0.000152806	TGTGGCGG	1	
2728	2735	0.000252362	TCTCGCGG	1	
3796	3803	0.00023847	TTTCCCCC	1	
4248	4241	0.000187535	CGTGGCGC	1	


Multi-pattern Scan #2
Group P-Value: 11.88e-09


Sequence #1
Accession: W10325	Name:regulator of G-protein signalling

Pattern #1 Accession: M00431 P-Value: 9.48e-12 Name: E2F-1
Start	Stop	P-Value	Sequence	Cluster ID
278	285	0.000187535	CGTGGCGC	1	
698	705	0.000252362	TCTCGCGG	1	
856	863	0.00023847	TTTCCCCC	1	
946	953	0.000152806	TGTGGCGG	1	

Pattern #2 Accession: M00440 P-Value: 9.98e-11 Name: LSF
Start	Stop	P-Value	Sequence	Cluster ID
248	241	0.000187535	CGTGGCGC	1	
728	735	0.000252362	TCTCGCGG	1	
796	803	0.00023847	TTTCCCCC	1	
916	923	0.000152806	TGTGGCGG	1	


Sequence #2
Accession: W10326	Name:small inducible cytokine

Pattern #1 Accession: M00431 P-Value: 9.48e-12 Name: E2F-1
Start	Stop	P-Value	Sequence	Cluster ID
166	173	0.000152806	TGTGGCGG	1	
278	285	0.000252362	TCTCGCGG	1	
446	453	0.00023847	TTTCCCCC	1	
498	491	0.000187535	CGTGGCGC	1	

Pattern #2 Accession: M00440 P-Value: 9.98e-11 Name: LSF
Start	Stop	P-Value	Sequence	Cluster ID
116	123	0.000152806	TGTGGCGG	1	
228	235	0.000252362	TCTCGCGG	1	
396	403	0.00023847	TTTCCCCC	1	
448	441	0.000187535	CGTGGCGC	1	


Multi-pattern Scan #3
Group P-Value: 5.87e-7


Sequence #1
Accession: W10325	Name:regulator of G-protein signalling

Pattern #1 Accession: M00439 P-Value: 1.25e-9 Name: E2F-3
Start	Stop	P-Value	Sequence	Cluster ID
248	241	0.000187535	CGTGGCGC	1	
728	735	0.000252362	TCTCGCGG	1	
796	803	0.00023847	TTTCCCCC	1	
916	923	0.000152806	TGTGGCGG	1	

Pattern #2 Accession: M00437 P-Value: 3.31e-5 Name: E2F-2
Start	Stop	P-Value	Sequence	Cluster ID
116	123	0.000152806	TGTGGCGG	1	
228	235	0.000252362	TCTCGCGG	1	
396	403	0.00023847	TTTCCCCC	1	
448	441	0.000187535	CGTGGCGC	1	


Sequence #2
Accession: W10326	Name:small inducible cytokine

Pattern #1 Accession: M00439 P-Value: 1.25e-9 Name: E2F-3
Start	Stop	P-Value	Sequence	Cluster ID
116	123	0.000152806	TGTGGCGG	1	
228	235	0.000252362	TCTCGCGG	1	
396	403	0.00023847	TTTCCCCC	1	
448	441	0.000187535	CGTGGCGC	1	

Pattern #2 Accession: M00437 P-Value: 3.31e-5 Name: E2F-2
Start	Stop	P-Value	Sequence	Cluster ID
248	241	0.000187535	CGTGGCGC	1	
728	735	0.000252362	TCTCGCGG	1	
796	803	0.00023847	TTTCCCCC	1	
916	923	0.000152806	TGTGGCGG	1