#Sequence Analysis by Your Favorite Program

#Pattern File: patterns.txt
#Sequences File: sequence.txt
#Background Sequences File: bg.sequences.txt
#Sequence Filtering: on
#Sequence Pvalue Cutoff: 0.01
#Site Pvalue Cutoff: 0.001


Sequence #1
Accession: W10325	Name:regulator of G-protein signalling 2

Pattern #1
Accession	P-value	Name
M00431	9.48937e-12	E2F-1

Start	Stop	P-value	Sequence
148	141	0.000187535	CGTGGCGC
328	335	0.000252362	TCTCGCGG
596	603	0.00023847	TTTCCCCC
816	823	0.000152806	TGTGGCGG

Pattern #2
Accession	P-value	Name
M00440	9.98937e-11	LSF

Start	Stop	P-value	Sequence
48	41	0.000187535	CGTGGCGC
216	223	0.000152806	TGTGGCGG
596	603	0.00023847	TTTCCCCC
928	935	0.000252362	TCTCGCGG

Pattern #3
Accession	P-value	Name
M00439	1.2e-9	E2F-3

Start	Stop	P-value	Sequence
228	235	0.000252362	TCTCGCGG
316	323	0.000152806	TGTGGCGG
348	341	0.000187535	CGTGGCGC
596	603	0.00023847	TTTCCCCC

Pattern #4
Accession	P-value	Name
M00437	3.342e-5	E2F-2

Start	Stop	P-value	Sequence
128	135	0.000252362	TCTCGCGG
216	223	0.000152806	TGTGGCGG
348	341	0.000187535	CGTGGCGC
396	403	0.00023847	TTTCCCCC


Sequence #2
Accession: W10326	Name:small inducible cytokine

Pattern #1
Accession	P-value	Name
M00431	9.48937e-12	E2F-1

Start	Stop	P-value	Sequence
248	241	0.000187535	CGTGGCGC
716	723	0.000152806	TGTGGCGG
728	735	0.000252362	TCTCGCGG
796	803	0.00023847	TTTCCCCC

Pattern #2
Accession	P-value	Name
M00440	9.98937e-11	LSF

Start	Stop	P-value	Sequence
228	235	0.000252362	TCTCGCGG
416	423	0.000152806	TGTGGCGG
448	441	0.000187535	CGTGGCGC
696	703	0.00023847	TTTCCCCC

Pattern #3
Accession	P-value	Name
M00439	1.2e-9	E2F-3

Start	Stop	P-value	Sequence
328	335	0.000252362	TCTCGCGG
448	441	0.000187535	CGTGGCGC
496	503	0.00023847	TTTCCCCC
816	823	0.000152806	TGTGGCGG

Pattern #4
Accession	P-value	Name
M00437	3.342e-5	E2F-2

Start	Stop	P-value	Sequence
128	135	0.000252362	TCTCGCGG
148	141	0.000187535	CGTGGCGC
416	423	0.000152806	TGTGGCGG
696	703	0.00023847	TTTCCCCC